PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G057800.1
Common NameB456_007G057800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 303aa    MW: 34392.8 Da    PI: 6.521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G057800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12124170455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+ri ++f  L  l+P +     kK +K ++L  A+eY+k+Lq
  Gorai.007G057800.1 124 EHVIAERKRRERISQSFLSLAALIPGL-----KKKDKNSVLGDAIEYLKQLQ 170
                         699***********************9.....89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.627120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-11125171No hitNo description
SMARTSM003537.3E-12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDPTFFTQY ETTNPIEYPF DDFNFQSESY SSYPRINGSS INEASHHQLD VFEKPPLKQL  60
KTNNWSSCIS PQKASFSSSS SHIISFNNSS SSLLYYGVDC DLKPKNEVSK MVGSLTRVPL  120
LAQEHVIAER KRRERISQSF LSLAALIPGL KKKDKNSVLG DAIEYLKQLQ ERKARLEEQV  180
AKRTVESVKF VKKTTQFYAQ DDQTSSYDES FDTQSKNPFP DIEARVSNKD VLIRIHCETN  240
KGCISNIINE VEKLHLSVLN SNALPFGQAT LYITIVAQME DEFSMTLRDL VKTLREGLLS  300
FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804132e-87JX580413.1 Gossypium hirsutum clone NBRI_GE12835 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488189.10.0PREDICTED: transcription factor NAI1-like
TrEMBLA0A0D2SER10.0A0A0D2SER1_G
STRINGVIT_07s0205g00180.t011e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-54bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]